Information for 6-GGCGATGGTT (Motif 19)

A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A G T C C G T A A C G T A G T C A C T G A G T C G T A C
p-value:1e-7
log p-value:-1.720e+01
Information Content per bp:1.957
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets69.2 +/- 26.3bp
Average Position of motif in Background62.4 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGCGATGGTT-
--CCATTGTTC
 A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox5/MA0087.1/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GGCGATGGTT-
----ATTGTTA
 A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

ZBTB7C/MA0695.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCGATGGTT--
NTCGGTGGTCGC
 A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T C A G T A G T C C A T G C A T G C A G T T C A G A C T G C A G T G A T C A T C G G A T C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGCGATGGTT-
-NCCATTGTTC
 A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGCGATGGTT-
-GCTGTGGTTT
 A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T

PB0070.1_Sox30_1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGCGATGGTT----
ANNTCCATTGTTCNNN
 A C G T A C G T A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGCGATGGTT--
--CCATTGTTYB
 A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Gfi1b/MA0483.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCGATGGTT-
TGCTGTGATTT
 A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

PB0098.1_Zfp410_1/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GGCGATGGTT--
TATTATGGGATGGATAA
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

PB0073.1_Sox7_1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GGCGATGGTT-------
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A C T G C G T A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T