Information for 1-SGGCYGCCTSCKC (Motif 1)

T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C
Reverse Opposite:
A C T G T G C A C T A G A T C G G C T A A C T G C T A G A T G C C T A G T C A G A T G C G T A C A T C G
p-value:1e-12
log p-value:-2.815e+01
Information Content per bp:1.746
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif4.12%
Number of Background Sequences with motif381.0
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets54.0 +/- 26.6bp
Average Position of motif in Background51.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0010.1_Egr1_1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:SGGCYGCCTSCKC---
--TCCGCCCCCGCATT
 T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T

EGR1/MA0162.2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:SGGCYGCCTSCKC-
CCCCCGCCCCCGCC
 T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C A C G T
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C

NRF1/MA0506.1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:SGGCYGCCTSCKC-
---GCGCCTGCGCA
 T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A

SP2/MA0516.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:SGGCYGCCTSCKC--
GCCCCGCCCCCTCCC
 T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C A C G T A C G T
A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C

SP1/MA0079.3/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:SGGCYGCCTSCKC-
---GCCCCGCCCCC
 T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C T G A G T C G A T C A G T C A G T C C A T G A G T C A G T C A G T C G A T C A G T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:SGGCYGCCTSCKC---
-GGCCYCCTGCTGDGH
 T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:SGGCYGCCTSCKC
-SNGCACCTGCHS
 T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C
A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

PB0052.1_Plagl1_1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---SGGCYGCCTSCKC
NNNGGGGCGCCCCCNN
 A C G T A C G T A C G T T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:SGGCYGCCTSCKC
-GGCGCGCT----
 T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:SGGCYGCCTSCKC------------
-----GCCTCCTCCMTCWGACTGKS
 T A G C A C T G A T C G A G T C A G T C A T C G A G T C G T A C C G A T A T G C A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C