Information for 1-TWWCCCTTAWTKA (Motif 3)

A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A
Reverse Opposite:
A C G T G T C A C G T A C G T A A C G T C G T A C G T A A C T G A C T G A C T G C G T A C G A T C G T A
p-value:1e-14
log p-value:-3.329e+01
Information Content per bp:1.874
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.1 +/- 24.5bp
Average Position of motif in Background58.4 +/- 8.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0055.1_Hoxa7_2/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TWWCCCTTAWTKA----
-TNCCATTAATTACTNC
 A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A T G C A G T C T G C A A C G T G C A T G T C A C G T A A C G T C A G T C G T A T G A C A C G T T G C A T G A C

PH0159.1_Rhox6/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TWWCCCTTAWTKA------
--TGCCTTAATTAATGCTC
 A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T C A G G T A C T G A C G A C T G A C T G C T A T C G A A C G T C G A T C G T A C T G A A G C T A C T G A T G C C G A T G A T C

NKX6-1/MA0674.1/Jaspar

Match Rank:3
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:TWWCCCTTAWTKA-
------TTAATTAN
 A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C

Hoxd8/MA0910.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TWWCCCTTAWTKA----
NAGCCATTAATTANTTA
 A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PH0080.1_Hoxd8/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TWWCCCTTAWTKA----
NAGCCATTAATTANTTA
 A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PH0011.1_Alx1_2/Jaspar

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TWWCCCTTAWTKA------
--CGCATTAATTAATTGGC
 A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C T C A G G T A C C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A A G C T A G C T C T A G C T A G T G A C

mix-a/MA0621.1/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TWWCCCTTAWTKA--
----AATTAATTAGT
 A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T

PH0062.1_Hoxb7/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TWWCCCTTAWTKA----
-TNNCATTAATTANTNC
 A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C

PH0030.1_Esx1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TWWCCCTTAWTKA------
--TCNATTAATTAATNNAN
 A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T A G C G T C A T C G A G A C T G A C T C G T A C T G A A G C T G A C T C T G A C T G A G A C T A T C G T C A G C G T A C G A T

PH0175.1_Vax2/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TWWCCCTTAWTKA------
---GNCTTAATTAGTGNNN
 A C G T G C T A C G A T G T A C G T A C A G T C A C G T A C G T C G T A C G A T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T T G A C A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T T A C G A G T C G C T A T G A C