Information for 7-ACAGGACAGAGBG (Motif 9)

C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G
Reverse Opposite:
A G T C T C G A A T G C C G A T A G T C A C G T A T C G A G C T A G T C A G T C A C G T A T C G A C G T
p-value:1e-10
log p-value:-2.439e+01
Information Content per bp:1.843
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif17.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets59.4 +/- 18.3bp
Average Position of motif in Background39.8 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ACAGGACAGAGBG---
-VAGRACAKWCTGTYC
 C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G A C G T A C G T A C G T
A C G T T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ACAGGACAGAGBG
CCAGGAACAG----
 A C G T C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ACAGGACAGAGBG
TRAGGTCA-----
 C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ACAGGACAGAGBG----
-NAGAACAGNCTGTNCT
 C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G A C G T A C G T A C G T A C G T
A C G T T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACAGGACAGAGBG
CAAAGGTCAG----
 A C G T C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:ACAGGACAGAGBG---
-VAGRACAKNCTGTBC
 C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G A C G T A C G T A C G T
A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:ACAGGACAGAGBG----
-NAGNACANNNTGTNCT
 C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G A C G T A C G T A C G T A C G T
A C G T T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ACAGGACAGAGBG
--GGAACAAAGR-
 C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ACAGGACAGAGBG-
ARGAGGMCAAAATGW
 A C G T C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ACAGGACAGAGBG
--AAAACAAAGG-
 C G T A A T G C C G T A A C T G C T A G C T G A A T G C C G T A A C T G C G T A T A C G A C G T C T A G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T