Information for 10-CCTAATGGAG (Motif 39)

A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A G T C C G T A A C G T A C G T C G T A A T C G A C T G
p-value:1e-6
log p-value:-1.550e+01
Information Content per bp:1.957
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.5 +/- 18.3bp
Average Position of motif in Background56.2 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCTAATGGAG
-CTAATKGV-
 A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CCTAATGGAG---
--TAATGGCGGNC
 A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCTAATGGAG
-NTAATTGN-
 A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G
A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCTAATGGAG
GKTAATGR--
 A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCTAATGGAG
-NTAATTGG-
 A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G
A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCTAATGGAG---
CCTTAATNGNTTTT
 A C G T A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G A C G T A C G T A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

EN2/MA0642.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCTAATGGAG
GNTAATTGGN
 A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G
T A C G A T G C A G C T T C G A C G T A A C G T A C G T T C A G T A C G A T C G

Barhl1/MA0877.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTAATGGAG
GCTAATTGCT
 A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

VENTX/MA0724.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTAATGGAG
-CTAATCGNT
 A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G
A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

HOXB3/MA0903.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCTAATGGAG
NNTAATTANN
 A G T C A T G C A C G T C G T A C G T A A C G T A C T G A C T G C G T A A C T G
A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T