Information for 19-RCAKGARAARRRAARA (Motif 26)

C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T A C G T G A C T A G T C G A C T A G C T A C G T A G C T A G C T A C G T A G T C G T A C A C G T A C T G A G C T
p-value:1e-9
log p-value:-2.248e+01
Information Content per bp:1.814
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets38.6 +/- 17.9bp
Average Position of motif in Background43.3 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RCAKGARAARRRAARA
TACTGGAAAAAAAA---
 A C G T C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:RCAKGARAARRRAARA
--AAGATAAGATAACA
 C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A
A C G T A C G T C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-RCAKGARAARRRAARA
NACAGGAAAT-------
 A C G T C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:RCAKGARAARRRAARA---
--GTTAAAAAAAAAAATTA
 C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A A C G T A C G T A C G T
A C G T A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RCAKGARAARRRAARA
NACAGGAAAT-------
 A C G T C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:RCAKGARAARRRAARA
ACAGGAAGTG------
 C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A
T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----RCAKGARAARRRAARA
ATTTGCATAACAAAG-----
 A C G T A C G T A C G T A C G T C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T A C G T A C G T A C G T

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:8
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:RCAKGARAARRRAARA-
-----GAAAMTGAAACT
 C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T

NFATC2/MA0152.1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:RCAKGARAARRRAARA
--TGGAAAA-------
 C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A
A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-RCAKGARAARRRAARA---
NNCCTGNAAAAAAAAAAAAA
 A C G T C T G A G T A C C G T A A C T G A C T G C G T A T C G A C T G A C G T A C T G A C T G A C T A G C G T A C G T A C T G A C G T A A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A