Information for 15-KKTGTSVWRAAMTKCT (Motif 19)

C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
Reverse Opposite:
G T C A T A C G G T C A C G T A A C G T C G A T A C G T G A C T G C T A A C G T A T G C T G C A A T G C G C T A T G C A G T A C
p-value:1e-10
log p-value:-2.479e+01
Information Content per bp:1.529
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.48%
Number of Background Sequences with motif319.2
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets55.2 +/- 22.3bp
Average Position of motif in Background49.5 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:KKTGTSVWRAAMTKCT
TAGGTAATAAAATTCA
 C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

PH0076.1_Hoxd11/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-KKTGTSVWRAAMTKCT
TAAGGTCGTAAAATCCT
 A C G T C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-KKTGTSVWRAAMTKCT
TAAAGTCGTAAAACGT-
 A C G T C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-KKTGTSVWRAAMTKCT
CAAGGTCGTAAAATCTT
 A C G T C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0012.1_Cdx1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-KKTGTSVWRAAMTKCT
TAAGGTAATAAAATTA-
 A C G T C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-KKTGTSVWRAAMTKCT
AAAGGTAATAAAATTT-
 A C G T C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:KKTGTSVWRAAMTKCT
---GTCATAAAAN---
 C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:KKTGTSVWRAAMTKCT
---GTCGTAAAAT---
 C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-KKTGTSVWRAAMTKCT
TAAAGTCGTAAAATAG-
 A C G T C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-KKTGTSVWRAAMTKCT
GGAGGTCATTAATTAT-
 A C G T C A T G A C G T C G A T A T C G A C G T T A C G T G C A C G A T C T G A T G C A G C T A T G C A C G A T C A G T A T G C C A G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T A C G T