Information for 3-GGAATTCCACCCT (Motif 6)

A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T
Reverse Opposite:
C T G A A C T G C T A G A C T G A G C T A C T G A C T G C T G A C G T A C G A T A C G T A G T C A T G C
p-value:1e-13
log p-value:-3.023e+01
Information Content per bp:1.823
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.9 +/- 23.1bp
Average Position of motif in Background36.5 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGAATTCCACCCT
GGAAATCCCC---
 A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGAATTCCACCCT
GGGAAATCCCCN--
 A C G T A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GGAATTCCACCCT
GGAAANCCCC---
 A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGAATTCCACCCT
GGGGATTCCCCC--
 A C G T A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGAATTCCACCCT
GGAAATTCCC---
 A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GGAATTCCACCCT---
-NRGCCCCRCCCHBNN
 A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T A C G T A C G T A C G T
A C G T G A C T T C A G C T A G A G T C A G T C G T A C A G T C C T G A A G T C A G T C A G T C G A C T A G T C A C T G A T G C

PB0114.1_Egr1_2/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGAATTCCACCCT---
NNAGTCCCACTCNNNN
 A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T A C G T A C G T A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

PB0110.1_Bcl6b_2/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGAATTCCACCCT-----
--ATCCCCGCCCCTAAAA
 A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GGAATTCCACCCT--
-NAGCCCCGCCCCCN
 A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T A C G T A C G T
A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGAATTCCACCCT
GGAAATTCCC---
 A T C G A C T G C G T A C G T A G A C T A G C T A G T C A G T C C T G A A G T C A G T C G T A C G A C T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T