Information for 21-GCATGTATGWCAT (Motif 41)

A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T
Reverse Opposite:
T C G A C G A T A C T G G C A T A G T C G C T A A G C T C G T A G T A C C G T A A C G T A C T G G T A C
p-value:1e-5
log p-value:-1.315e+01
Information Content per bp:1.739
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif71.1
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets46.7 +/- 17.2bp
Average Position of motif in Background52.7 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0082.1_Irx2/Jaspar

Match Rank:1
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCATGTATGWCAT
TAAATACATGTAAAATT-
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCATGTATGWCAT
NTGGAATGTN------
 A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T
C T G A G C A T C T A G T C A G G C T A C G T A G C A T A C T G G A C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCATGTATGWCAT
AAAATACATGTAATACT-
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCATGTATGWCAT
--AAYTAGGTCA-
 A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

TEAD1/MA0090.2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCATGTATGWCAT
NTGGAATGTG------
 A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T
C T G A G C A T T C A G C A T G C G T A T C G A C A G T A C T G A G C T C T A G A C G T A C G T A C G T A C G T A C G T A C G T

PH0085.1_Irx4/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCATGTATGWCAT
AATATACATGTAAAACA-
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCATGTATGWCAT
AATATACATGTAATATA-
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCATGTATGWCAT-
ACATTCATGACACG
 A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PH0086.1_Irx5/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCATGTATGWCAT
AATATACATGTAAAATT-
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCATGTATGWCAT
GGACTGAATTCATGCC--
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A C G T A C T G C G A T C T G A C A G T T A C G C G T A G T A C C G T A A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C A C G T A C G T