Information for 10-RGGGCGCYAG (Motif 28)

C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T C T A G C T A G A G T C A C T G G T A C A G T C G A T C G A T C
p-value:1e-9
log p-value:-2.184e+01
Information Content per bp:1.764
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.64%
Number of Background Sequences with motif622.7
Percentage of Background Sequences with motif1.29%
Average Position of motif in Targets41.4 +/- 30.2bp
Average Position of motif in Background50.3 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0113.1_E2F3_2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RGGGCGCYAG----
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

PB0112.1_E2F2_2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RGGGCGCYAG----
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

E2F1/MA0024.3/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RGGGCGCYAG-
TTTGGCGCCAAA
 A C G T C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G A C G T
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:RGGGCGCYAG----
-AGGTGNCAGACAG
 C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RGGGCGCYAG---
-AGGTGHCAGACA
 C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RGGGCGCYAG
-CGGAGC---
 C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RGGGCGCYAG
AGCGCGCC--
 C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RGGGCGCYAG--
CTGTTGCTAGGS
 C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:RGGGCGCYAG-
--CGTGCCAAG
 C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RGGGCGCYAG
-AGGTGTCA-
 C T A G C T A G A C T G A C T G G T A C A C T G A G T C A G T C C G T A A C T G
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T