Information for 13-GCGCCCTCAGRTGGTT (Motif 19)

A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T
Reverse Opposite:
T G C A T C G A T G A C A G T C C T G A G A C T T A G C C A G T A C T G C T G A C A T G C A T G A C T G A G T C A C T G T A G C
p-value:1e-11
log p-value:-2.557e+01
Information Content per bp:1.659
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif56.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets55.4 +/- 25.1bp
Average Position of motif in Background43.6 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCCTCAGRTGGTT
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCCTCAGRTGGTT-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCGCCCTCAGRTGGTT-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCGCCCTCAGRTGGTT
NTGCCCANNGGTNA--
 A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:GCGCCCTCAGRTGGTT
-------CAGCTGNT-
 A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCGCCCTCAGRTGGTT
---NNVVCAGCTGBN-
 A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T
A C G T A C G T A C G T C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:7
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GCGCCCTCAGRTGGTT
-------CACGTGNT-
 A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A A T G C T A C G G A C T C T A G A T C G A G C T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GCGCCCTCAGRTGGTT
------HCAGCTGDTN
 A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GCGCCCTCAGRTGGTT
AGCCACTCAAG-----
 A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----GCGCCCTCAGRTGGTT
ANCGCGCGCCCTTNN------
 A C G T A C G T A C G T A C G T A C G T A T C G G T A C T C A G G T A C G T A C G A T C A G C T G T A C G C T A A C T G C T G A A G C T A C T G A C T G A G C T A C G T
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T