Information for 12-HAAAGCCACAAAGGCT (Motif 18)

G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T
Reverse Opposite:
G T C A C T A G G T A C G T A C A G C T A C G T A C G T C A T G A C G T A C T G C T A G G T A C C G A T A C G T C G A T C G T A
p-value:1e-11
log p-value:-2.576e+01
Information Content per bp:1.769
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.6 +/- 20.4bp
Average Position of motif in Background76.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:HAAAGCCACAAAGGCT
------AACAAAGG--
 G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:HAAAGCCACAAAGGCT
------RACAAWGG--
 G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:HAAAGCCACAAAGGCT
--AAACCACANN----
 G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T
A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:HAAAGCCACAAAGGCT
--AAACCACAGAN---
 G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T
A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:HAAAGCCACAAAGGCT
--AAACCGCAAA----
 G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T
A C G T A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:HAAAGCCACAAAGGCT
--AAGCCATAAAA---
 G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:HAAAGCCACAAAGGCT-
-AAACAGACAAAGGAAT
 G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:HAAAGCCACAAAGGCT
----VRRACAAWGG--
 G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T
A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:HAAAGCCACAAAGGCT
----AAAACAAAGG--
 G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:HAAAGCCACAAAGGCT
-------ACAAAG---
 G C A T C G T A G T C A C G T A C A T G A G T C A G T C G T C A G T A C C G T A C G T A C T G A A C T G A C T G G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T