Information for 11-SWAGCTWCMSAARRMA (Motif 17)

A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A
Reverse Opposite:
A C G T A C T G A G T C A G C T A C G T A C G T A T C G A C T G A C T G C G A T C G T A A T C G A G T C A C G T C G A T A T C G
p-value:1e-11
log p-value:-2.576e+01
Information Content per bp:1.810
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.2 +/- 27.5bp
Average Position of motif in Background54.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:SWAGCTWCMSAARRMA
CAAGCTT---------
 A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-SWAGCTWCMSAARRMA
ACATGCTACCTAATAC-
 A C G T A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:SWAGCTWCMSAARRMA
---GCTTCC-------
 A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A
A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-SWAGCTWCMSAARRMA
ACTTGCTACCTACACC-
 A C G T A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.50
Offset:2
Orientation:forward strand
Alignment:SWAGCTWCMSAARRMA--
--AAACAGACAAAGGAAT
 A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A A C G T A C G T
A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-SWAGCTWCMSAARRMA
TNNTGCTACTGTNNNN-
 A C G T A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:SWAGCTWCMSAARRMA
--NGCTN---------
 A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:8
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-SWAGCTWCMSAARRMA
CNNNGCTACTGTANNN-
 A C G T A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T A C G T

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.48
Offset:3
Orientation:forward strand
Alignment:SWAGCTWCMSAARRMA
---GCTCCG-------
 A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:SWAGCTWCMSAARRMA-----
-NNCCTGNAAAAAAAAAAAAA
 A T G C C G T A C G T A A C T G A T G C A C G T G C A T A G T C G T A C A T G C C G T A C G T A C T G A C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A