Information for 3-TGCCTGCTCGATA (Motif 6)

A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A
Reverse Opposite:
C G A T C G T A A C G T A G T C A C T G G T C A C T A G A G T C C G T A C T A G C T A G G T A C C G T A
p-value:1e-12
log p-value:-2.943e+01
Information Content per bp:1.828
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.4 +/- 19.7bp
Average Position of motif in Background56.2 +/- 10.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CUX2/MA0755.1/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGCCTGCTCGATA-
----TAATCGATAA
 A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A A C G T
A C G T A C G T A C G T A C G T G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

CUX1/MA0754.1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TGCCTGCTCGATA-
----TAATCGATAA
 A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A A C G T
A C G T A C G T A C G T A C G T G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGCTCGATA
TWGTCTGV------
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGCTCGATA
GCGCCTGCGCA---
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A
T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TGCCTGCTCGATA-
----DGATCRATAN
 A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A A C G T
A C G T A C G T A C G T A C G T C T A G C T A G C T G A A C G T A G T C C T A G C G T A A C G T G T C A G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGCCTGCTCGATA
VBSYGTCTGG------
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGCTCGATA
CTGTCTGG------
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TGCCTGCTCGATA
ATTTCCTGTN-----
 A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A
C T G A A G C T A C G T A C G T A G T C A G T C A C G T A C T G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCTGCTCGATA
NNACTTGCCTT-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---TGCCTGCTCGATA
CACTTCCTGT------
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C A C G T A G T C C T A G G T C A C G A T C G T A
A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T