Information for 7-CCAGCVAAGAATT (Motif 14)

A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T
Reverse Opposite:
C T G A C G T A A G C T C G A T A G T C A G C T A C G T A C T G A T C G A G T C A C G T A C T G C T A G
p-value:1e-10
log p-value:-2.462e+01
Information Content per bp:1.842
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.9 +/- 24.1bp
Average Position of motif in Background73.9 +/- 12.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCAGCVAAGAATT
-AAGGCAAGTGT-
 A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCAGCVAAGAATT---
GCAGCCAAGCGTGACN
 A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCAGCVAAGAATT--
SCAGYCADGCATGAC
 A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCVAAGAATT
TCCCAGMCRAGCCCC
 A C G T A C G T A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCAGCVAAGAATT
BCAGACWA-----
 A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCVAAGAATT
TGCCCAGNHW------
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:7
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------CCAGCVAAGAATT
NNNCTTTCCAGGAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T
G A C T C G A T T C A G G A T C G A C T A G C T A G C T A G T C G A T C C G T A C T A G C T A G T C G A T C G A C T G A A C G T A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CCAGCVAAGAATT--
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCAGCVAAGAATT
-CAGCC-------
 A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CCAGCVAAGAATT
--AGATAAGA---
 A G T C A G T C C G T A A C T G A T G C T A G C C G T A C T G A A C T G C G T A T C G A A C G T A G C T
A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T