Information for 6-AGGCGGGTAT (Motif 11)

C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T
Reverse Opposite:
C T G A A G C T C G T A A G T C A G T C G A T C A C T G A G T C A G T C A G C T
p-value:1e-11
log p-value:-2.578e+01
Information Content per bp:1.871
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets50.2 +/- 32.2bp
Average Position of motif in Background54.7 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GCM2/MA0767.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGGCGGGTAT
TATGCGGGTA-
 A C G T C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----AGGCGGGTAT--
NNNNATGCGGGTNNNN
 A C G T A C G T A C G T A C G T C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T A C G T A C G T
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

GCM1/MA0646.1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGGCGGGTAT
CATGCGGGTAC
 A C G T C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGGCGGGTAT
CWGGCGGGAA-
 A C G T C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGGCGGGTAT
BTKGGCGGGAAA
 A C G T A C G T C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T
A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGGCGGGTAT
AAGGCAAGTGT
 A C G T C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

E2F6/MA0471.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGCGGGTAT-
GGGCGGGAAGG
 C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T A C G T
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----AGGCGGGTAT--
NAGANTGGCGGGGNGNA
 A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

SP2/MA0516.1/Jaspar

Match Rank:9
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AGGCGGGTAT
GGGNGGGGGCGGGGC-
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGCGGGTAT-----
GCTGGGGGGTACCCCTT
 A C G T A C G T C T G A A C T G A C T G G T A C C A T G A C T G A C T G A C G T C T G A A G C T A C G T A C G T A C G T A C G T A C G T
C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T