Information for 15-CASYTKCTRAGGG (Motif 26)

A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G
Reverse Opposite:
A G T C A G T C A G T C C G A T A G C T C G T A A C T G G T C A C G T A C T G A A T C G A C G T C T A G
p-value:1e-6
log p-value:-1.468e+01
Information Content per bp:1.871
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets67.8 +/- 16.6bp
Average Position of motif in Background57.0 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0054.1_Rfx3_1/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CASYTKCTRAGGG-----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CASYTKCTRAGGG
CTGTTGCTAGGS-
 A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CASYTKCTRAGGG-
NNCGTTGCTATGGNN
 A C G T A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CASYTKCTRAGGG
CTCAGCAGCTGCTACTG-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CASYTKCTRAGGG-
NCCGTTGCTANGNGN
 A C G T A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CASYTKCTRAGGG-
------CTAATKGV
 A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CASYTKCTRAGGG
SNGCACCTGCHS----
 A C G T A C G T A C G T A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CASYTKCTRAGGG
CCCCCTGCTGTG--
 A C G T A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CASYTKCTRAGGG
AGCAGCTGCT-----
 A C G T A C G T A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G
T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CASYTKCTRAGGG-
----TTCTNMGGAA
 A G T C C G T A A T G C A G C T A C G T A C G T A G T C A C G T T C G A C G T A A C T G A C T G A C T G A C G T
A C G T A C G T A C G T A C G T C A G T G C A T A T G C G A C T C T A G T G C A C T A G C T A G G C T A C T G A