Information for 8-RATACAWTTSCCA (Motif 13)

T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A
Reverse Opposite:
G C A T A C T G A T C G A T G C G C T A C T G A C G A T A C G T A T C G C G A T G C T A G C A T A G T C
p-value:1e-10
log p-value:-2.336e+01
Information Content per bp:1.682
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif87.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets45.7 +/- 26.2bp
Average Position of motif in Background46.4 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:RATACAWTTSCCA
ACTACAATTCCC-
 T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:RATACAWTTSCCA
RNAACAATGG---
 T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RATACAWTTSCCA------
AACTACAATTCCCAGAATGC
 A C G T T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:RATACAWTTSCCA
-NAACAAT-----
 T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A
A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---RATACAWTTSCCA
NTTGATACATT-----
 A C G T A C G T A C G T T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----RATACAWTTSCCA
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C G T T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RATACAWTTSCCA
VRAACAATGG---
 T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---RATACAWTTSCCA
NNCNNAACAATTNT--
 A C G T A C G T A C G T T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:RATACAWTTSCCA
-GAACAATGG---
 T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RATACAWTTSCCA
GTAAACAAT-----
 A C G T T C A G C G T A C G A T C G T A A T G C G T C A G C T A A G C T C G A T A T C G A T G C G T A C C G T A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T