Information for 9-GCTTTATGGG (Motif 9)

C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G
Reverse Opposite:
T A G C T A G C T G A C G T C A A C G T T C G A T C G A C G T A C A T G G T A C
p-value:1e-11
log p-value:-2.552e+01
Information Content per bp:1.663
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif7.32%
Number of Background Sequences with motif1376.9
Percentage of Background Sequences with motif2.92%
Average Position of motif in Targets52.9 +/- 24.3bp
Average Position of motif in Background49.2 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GCTTTATGGG
NTTTTATTGG
 C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GCTTTATGGG-
-TTTTATKRGG
 C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCTTTATGGG
TTTTTATTGG
 C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTATGGG-
DGWTTTATGRCN
 A C G T C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCTTTATGGG
NTTTTATTGG
 C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GCTTTATGGG-
-TTTTATTRGN
 C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GCTTTATGGG--
-TTTTATGGCTN
 C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

ZNF143/MA0088.2/Jaspar

Match Rank:8
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----GCTTTATGGG--
CAATGCATTGTGGGTA
 A C G T A C G T A C G T A C G T C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G A C G T A C G T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTATGGG-
TGATTTATGGCC
 A C G T C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTATGGG
TGATTTATGGC
 A C G T C A T G G T A C G C A T A G C T A G C T T G C A C A G T A C T G A T C G A T C G
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C