Information for 9-AGGGGCAGCCAAT (Motif 8)

T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T
Reverse Opposite:
G T C A A G C T C A G T A C T G C T A G A G T C C G A T A C T G G T A C A T G C A T G C T A G C A G C T
p-value:1e-11
log p-value:-2.714e+01
Information Content per bp:1.782
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif29.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets53.8 +/- 23.2bp
Average Position of motif in Background44.8 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.67
Offset:6
Orientation:forward strand
Alignment:AGGGGCAGCCAAT---
------AGCCAATCGG
 T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:AGGGGCAGCCAAT
----BCAGACWA-
 T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AGGGGCAGCCAAT--
---ACTAGCCAATCA
 T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:AGGGGCAGCCAAT
------TGCCAA-
 T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AGGGGCAGCCAAT
----CGTGCCAAG
 T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGGGGCAGCCAAT
-----CAGCC---
 T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGGGGCAGCCAAT
TNNGGGCAG-----
 A C G T T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGGGGCAGCCAAT--
AAGCACCTGTCAATAT
 A C G T T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGGGGCAGCCAAT---
-AGGGAAGTCATTTCT
 T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T A C G T A C G T A C G T
A C G T C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGGGGCAGCCAAT---
-AAATGGACCAATCAG
 T C G A A T C G T A C G T A C G A C T G G T A C C G T A A C T G A G T C A G T C G C T A C T G A A C G T A C G T A C G T A C G T
A C G T T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G