Information for 19-GGCAGGCVGCCTG (Motif 20)

T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G
Reverse Opposite:
A G T C C G T A C A T G A C T G A G T C A T C G A C T G T A G C A G T C C A G T A T C G A T G C A G T C
p-value:1e-7
log p-value:-1.774e+01
Information Content per bp:1.791
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif8.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets57.9 +/- 25.7bp
Average Position of motif in Background41.5 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGGCVGCCTG
TGGCAGNCTGCCAG
 A C G T T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGGCVGCCTG-
TTGGCANNNTGCCAAG
 A C G T A C G T T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCVGCCTG--
-TCAGNGAGCGTGAC
 T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G A C G T A C G T
A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGCAGGCVGCCTG
---AGCGCGCC--
 T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G
A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCVGCCTG
DCHCAGCAGGRGGCC--
 A C G T A C G T A C G T A C G T T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCAGGCVGCCTG
TGGCACCATGCCAA
 A C G T T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCVGCCTG
-CCAGACRSVB--
 T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGGCVGCCTG
SDGCAGGTGCNS--
 A C G T T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCVGCCTG
-CCAGACAG----
 T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GGCAGGCVGCCTG
-------TGCGTG
 T C A G A T C G A T G C G T C A A C T G A T C G G T A C T A G C A C T G A G T C G A T C C G A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G