Information for 6-TTTTAAAAAC (Motif 9)

A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C
Reverse Opposite:
C A T G G C A T A G C T A G C T A G C T G C A T G C T A C G T A G T C A C T G A
p-value:1e-4
log p-value:-9.529e+00
Information Content per bp:1.693
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.73%
Number of Background Sequences with motif1171.1
Percentage of Background Sequences with motif2.45%
Average Position of motif in Targets58.0 +/- 30.0bp
Average Position of motif in Background49.8 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAAC--
CCGTATTATAAACAA
 A C G T A C G T A C G T A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTTTAAAAAC-
-TTTGAAACCG
 A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTTTAAAAAC
ATTTGAATT-
 A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAAAC
CCTTTTATAGNC
 A C G T A C G T A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTTTAAAAAC
GTCGTAAAAA-
 A C G T A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTTTAAAAAC-
AAATAAGAAAAAAC
 A C G T A C G T A C G T A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

PB0182.1_Srf_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTTTAAAAAC------
GTTAAAAAAAAAAATTA
 A C G T A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAAAC
NCYAATAAAA--
 A C G T A C G T A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTTTAAAAAC
GTCGTAAAAT-
 A C G T A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTTTAAAAAC
GCTCGTAAAAA-
 A C G T A C G T A G C T C A G T C G A T C G A T C G T A T C G A C T G A T C G A C G T A G T A C
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T