Information for 9-CTGGCAGCAGAGC (Motif 6)

A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
Reverse Opposite:
A T C G A G T C C G A T A G T C A C G T A C T G A T G C C G A T A C T G A G T C A G T C C G T A A T C G
p-value:1e-10
log p-value:-2.486e+01
Information Content per bp:1.904
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.4 +/- 28.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGCAGAGC
SCTGTCARCACC--
 A C G T A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGCAGAGC
CTTGGCAA------
 A C G T A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAGCAGAGC
NTTGGCANN-----
 A C G T A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGGCAGCAGAGC
TTGGCA-------
 A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTGGCAGCAGAGC
VGCTGWCAVB-----
 A C G T A C G T A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTGGCAGCAGAGC
SCCTAGCAACAG---
 A C G T A C G T A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTGGCAGCAGAGC
--CGCAGCTGCG-
 A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CTGGCAGCAGAGC
GGTCTGGCAT------
 A C G T A C G T A C G T A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTGGCAGCAGAGC
--ANCAGCTG---
 A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAGCAGAGC
GGTTGGCAT------
 A C G T A C G T A T G C A C G T A C T G A C T G A G T C C G T A A T C G A G T C C G T A A C T G C G T A A C T G A T G C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T