Information for 7-GGAATTGCCC (Motif 12)

A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A G T C C G T A C G T A A C G T A C G T A G T C A G T C
p-value:1e-5
log p-value:-1.379e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 27.2bp
Average Position of motif in Background79.2 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGAATTGCCC-
GGGAAATCCCCN
 A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGAATTGCCC
GGGAATTTCC-
 A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GGAATTGCCC
GGAAANCCCC
 A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGAATTGCCC
GGAAATCCCC
 A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGAATTGCCC
GGGAATTTCC-
 A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGAATTGCCC-
GGGGATTCCCCC
 A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGAATTGCCC-
AGGGGATTCCCCT
 A C G T A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGAATTGCCC--
GGGATTGCATNN
 A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T
T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGAATTGCCC------
GGGTGTGCCCAAAAGG
 A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

PH0024.1_Dlx5/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GGAATTGCCC-
NANNGNTAATTACCNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A C G T A A C G T A C G T A C T G A G T C A G T C A G T C A C G T
A T G C T C G A A C T G T G C A T C A G A T G C G A C T G T C A C G T A G A C T C A G T C T G A A G T C A G T C A T G C T A G C