Information for 4-TGTGDCTTTTGGC (Motif 5)

C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A G T C A T C G A C G T A T C A G G A T C T G A C C T G A G T A C G C T A
p-value:1e-14
log p-value:-3.265e+01
Information Content per bp:1.735
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif192.0
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets54.8 +/- 23.6bp
Average Position of motif in Background49.3 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--TGTGDCTTTTGGC-
NNTGTTTATTTTGGCA
 A C G T A C G T C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.76
Offset:7
Orientation:reverse strand
Alignment:TGTGDCTTTTGGC---
-------NTTGGCANN
 C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.76
Offset:8
Orientation:forward strand
Alignment:TGTGDCTTTTGGC-
--------TTGGCA
 C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.73
Offset:6
Orientation:reverse strand
Alignment:TGTGDCTTTTGGC---
------NNTTGGCANN
 C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:TGTGDCTTTTGGC--
-------CTTGGCAA
 C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:TGTGDCTTTTGGC--
------GGTTGGCAT
 C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

E2F7/MA0758.1/Jaspar

Match Rank:7
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:TGTGDCTTTTGGC-------
------TTTTGGCGGGAAAA
 C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T G C A T C G A T T A C G A C T G A G T C A C T G A T C G A T C G C T G A C T G A G C T A G C T A

PB0112.1_E2F2_2/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGTGDCTTTTGGC--------
----NNNNTTGGCGCCGANNN
 C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGTGDCTTTTGGC--------
----NNNNTTGGCGCCGANNN
 C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:TGTGDCTTTTGGC--
------TNNGGGCAG
 C G A T C A T G G A C T A C T G C A T G A G T C A C G T A G C T A C G T A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G