Information for 11-CTTGGCACAG (Motif 19)

G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G
Reverse Opposite:
A G T C C G A T T A C G C A G T A C T G G A T C T G A C G T C A T G C A C T A G
p-value:1e-8
log p-value:-2.021e+01
Information Content per bp:1.653
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif8.53%
Number of Background Sequences with motif1927.1
Percentage of Background Sequences with motif3.99%
Average Position of motif in Targets50.0 +/- 22.9bp
Average Position of motif in Background49.4 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCACAG
NNTTGGCANN-
 A C G T G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTTGGCACAG
NTTGGCANN-
 G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CTTGGCACAG
-TTGGCA---
 G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTTGGCACAG
CTTGGCAA--
 G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTTGGCACAG
CCAGGAACAG
 G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCACAG
GGTTGGCAT--
 A C G T G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CTTGGCACAG-
-----CACAGN
 G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCACAG
NGTGGGCAT--
 A C G T G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTTGGCACAG
WDNCTGGGCA---
 A C G T A C G T A C G T G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTTGGCACAG--
--TGGAACAGMA
 G A T C A C G T C A G T A C T G C T A G T G A C G T C A A T G C G C T A T C A G A C G T A C G T
A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A