Information for 7-TTWTAAAATT (Motif 9)

C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T
Reverse Opposite:
T G C A C T G A G A C T C G A T C A G T G C A T T C G A C G A T G C T A G T C A
p-value:1e-8
log p-value:-1.961e+01
Information Content per bp:1.595
Number of Target Sequences with motif149.0
Percentage of Target Sequences with motif17.59%
Number of Background Sequences with motif5213.8
Percentage of Background Sequences with motif10.85%
Average Position of motif in Targets46.4 +/- 29.0bp
Average Position of motif in Background50.6 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TTWTAAAATT---
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0046.1_Hoxa10/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TTWTAAAATT--
TAGGTAATAAAATTCA
 A C G T A C G T A C G T A C G T C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----TTWTAAAATT-
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0012.1_Cdx1/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----TTWTAAAATT-
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A C G T A C G T C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PROP1/MA0715.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTWTAAAATT-
TAATTTAATTA
 C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T A C G T
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TTWTAAAATT--
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Arid5a/MA0602.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTWTAAAATT--
NNTNNCAATATTAG
 A C G T A C G T C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TTWTAAAATT--
NNTNNCAATATTAG
 A C G T A C G T C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTWTAAAATT
NCYAATAAAA--
 A C G T A C G T C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TTWTAAAATT
GGTCGTAAAATT
 A C G T A C G T C A G T C G A T G C T A A G C T C G T A G T C A G C T A C T G A G A C T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T