Information for 5-CGCTAATGAA (Motif 7)

A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A
Reverse Opposite:
A C G T A C G T A G T C C G T A A C G T A C G T C G T A A T C G A G T C A C T G
p-value:1e-9
log p-value:-2.205e+01
Information Content per bp:1.870
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif14.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.6 +/- 22.6bp
Average Position of motif in Background48.0 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA5/MA0158.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CGCTAATGAA
CACTAATT--
 A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A
G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGCTAATGAA
-GKTAATGR-
 A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A
A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T

PH0096.1_Lhx6_1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGCTAATGAA----
GAGCGTTAATTAATGTA
 A C G T A C G T A C G T A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A A C G T A C G T A C G T A C G T
T A C G C G T A T C A G G T A C T C A G G A C T G A C T T C G A C T G A A G C T A G C T C T G A C T G A A C G T C A T G A G C T G C T A

PH0175.1_Vax2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGCTAATGAA---
GTGCACTAATTAAGAC
 A C G T A C G T A C G T A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A A C G T A C G T A C G T
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C

mix-a/MA0621.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGCTAATGAA--
-NCTAATTAANN
 A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A A C G T A C G T
A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGCTAATGAA-
-NNTAATTAGN
 A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A A C G T
A C G T T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C

EMX1/MA0612.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGCTAATGAA-
-CCTAATTACC
 A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A A C G T
A C G T T G A C A G T C G A C T T C G A C G T A C G A T C A G T C T G A T A G C A G T C

PH0027.1_Emx2/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CGCTAATGAA----
NNCCACTAATTAGNNNT
 A C G T A C G T A C G T A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A A C G T A C G T A C G T A C G T
T C A G C A G T A T G C T G A C T C G A A G T C G A C T G T C A G C T A C A G T A C G T C T G A T C A G A G C T A C T G A T C G C G A T

HOXA2/MA0900.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGCTAATGAA-
-GNTAATTANN
 A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A A C G T
A C G T A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G

HOXB3/MA0903.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGCTAATGAA-
-NNTAATTANN
 A G T C C T A G A T G C A C G T C G T A T C G A C G A T A C T G G T C A C G T A A C G T
A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T