Information for 5-RTGTGGTRCCAGC (Motif 5)

T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C
Reverse Opposite:
A C T G A G T C A C G T A C T G C T A G A G C T C G T A T G A C A G T C C G T A A T G C C G T A A G T C
p-value:1e-12
log p-value:-2.914e+01
Information Content per bp:1.744
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.27%
Number of Background Sequences with motif108.2
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets50.8 +/- 27.0bp
Average Position of motif in Background51.3 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:forward strand
Alignment:RTGTGGTRCCAGC-
-----ATGCCAACC
 T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:RTGTGGTRCCAGC--
-----ATGCCAGACN
 T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:forward strand
Alignment:RTGTGGTRCCAGC
----CGTGCCAAG
 T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.60
Offset:5
Orientation:forward strand
Alignment:RTGTGGTRCCAGC
-----TTGCCAAG
 T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:RTGTGGTRCCAGC
------TGCCAA-
 T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RTGTGGTRCCAGC
-GGTGYTGACAGS
 T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C
A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RTGTGGTRCCAGC-----
--ACTATGCCAACCTACC
 T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:RTGTGGTRCCAGC-
----VBTGWCAGCB
 T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C A C G T
A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:RTGTGGTRCCAGC-
----GGTGCCAAGT
 T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C A C G T
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:RTGTGGTRCCAGC--
---AGGTGHCAGACA
 T C A G A C G T A T C G C G A T T C A G A C T G G C A T C T G A A G T C A G T C C G T A C T A G G T A C A C G T A C G T
A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A