Information for 5-TGMTAMGTGTAAATTT (Motif 4)

A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A C G T C G A T C G A T C G T A G T A C C G T A A G T C A C G T A C G T C G T A C A G T G A T C C G T A
p-value:1e-13
log p-value:-3.086e+01
Information Content per bp:1.766
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets76.3 +/- 11.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0082.1_Irx2/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGMTAMGTGTAAATTT
TAAATACATGTAAAATT
 A C G T A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PH0087.1_Irx6/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGMTAMGTGTAAATTT
AAAATACATGTAAAAAT
 A C G T A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TGMTAMGTGTAAATTT
----AGGTGTTAAT--
 A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGMTAMGTGTAAATTT
AATATACATGTAAAATT
 A C G T A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PH0084.1_Irx3_2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGMTAMGTGTAAATTT
AATATACATGTAATATA
 A C G T A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

PH0085.1_Irx4/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGMTAMGTGTAAATTT
AATATACATGTAAAACA
 A C G T A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PH0083.1_Irx3_1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGMTAMGTGTAAATTT
AAAATACATGTAATACT
 A C G T A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

TBX2/MA0688.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TGMTAMGTGTAAATTT
---AAGGTGTGAAA--
 A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGMTAMGTGTAAATTT
----AGGTGTGAAA--
 A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TGMTAMGTGTAAATTT
---ATTATGCTAATTT
 A C G T C A T G G T C A G A C T C G T A T G C A C T A G C G A T A C T G A C G T C G T A C G T A C G T A C G A T A C G T A C G T
A C G T A C G T A C G T C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T