Information for 4-SCTTGCTGCCACCTAT (Motif 3)

A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T
Reverse Opposite:
G T C A G A C T C T G A A C T G A C T G A C G T C A T G A T C G A G T C C G T A A C T G A G T C G T C A G T C A C A T G A T G C
p-value:1e-15
log p-value:-3.681e+01
Information Content per bp:1.719
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.9 +/- 19.9bp
Average Position of motif in Background58.3 +/- 42.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:SCTTGCTGCCACCTAT
-CTGTCTGTCACCT--
 A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:SCTTGCTGCCACCTAT
------TGACACCT--
 A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.56
Offset:5
Orientation:forward strand
Alignment:SCTTGCTGCCACCTAT
-----ATGCCAACC--
 A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:SCTTGCTGCCACCTAT
--TGTCTGDCACCT--
 A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:SCTTGCTGCCACCTAT---
---ACTTGCTACCTACACC
 A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:SCTTGCTGCCACCTAT------
--ANAGTGCCACCTGGTGGCCA
 A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:SCTTGCTGCCACCTAT--
--ACTATGCCAACCTACC
 A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T A C G T A C G T
A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PKNOX2/MA0783.1/Jaspar

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:SCTTGCTGCCACCTAT--
------TGACACCTGTCA
 A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:SCTTGCTGCCACCTAT--
-ATAAATGACACCTATCA
 A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T A C G T A C G T
A C G T G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

CTCF/MA0139.1/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:SCTTGCTGCCACCTAT------
---TAGCGCCCCCTGGTGGCCA
 A T C G G T A C C A G T A C G T T A C G G T A C C G A T A C T G A T G C G T A C G T C A G T A C A G T C A G C T C T G A C A G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A