Information for 5-AAAGGGTTAA (Motif 5)

C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C T G A A G T C A G T C A G T C A C G T A C G T C G A T
p-value:1e-13
log p-value:-3.173e+01
Information Content per bp:1.923
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif37.4
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets54.3 +/- 24.3bp
Average Position of motif in Background44.6 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0138.1_Pitx2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGTTAA-----
TGAAGGGATTAATCATC
 A C G T A C G T C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PB0109.1_Bbx_2/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AAAGGGTTAA-------
TGATTGTTAACAGTTGG
 C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAAGGGTTAA-
-VRGGATTARN
 C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAAGGGTTAA
AAGGTGTKAA
 C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGTTAA-----
TGTAGGGATTAATTGTC
 A C G T A C G T C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AAAGGGTTAA
--NGGATTAA
 C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAAGGGTTAA-----
AGAGGGGATTAATTTAT
 A C G T A C G T C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

Dmbx1/MA0883.1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AAAGGGTTAA----
TGAACCGGATTAATGAA
 A C G T A C G T A C G T C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AAAGGGTTAA----
TGAACCGGATTAATGAA
 A C G T A C G T A C G T C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AAAGGGTTAA-----
NANAGGGATTAATTATN
 A C G T A C G T C G T A G T C A C G T A C T A G A C T G A C T G A G C T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C