Information for 10-AATGTAGCTC (Motif 16)

C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C
Reverse Opposite:
A C T G C G T A C T A G A G T C A C G T T G C A G T A C C T G A A C G T A C G T
p-value:1e-8
log p-value:-2.023e+01
Information Content per bp:1.859
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif60.6
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets55.5 +/- 24.6bp
Average Position of motif in Background54.3 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AATGTAGCTC--
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T A C G T C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AATGTAGCTC--
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C G T C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATGTAGCTC--
TATAAGTAGGTCAA
 A C G T A C G T C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C A C G T A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

DMRT3/MA0610.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AATGTAGCTC-
AATGTATCAAT
 C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C A C G T
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:AATGTAGCTC
-----NGCTN
 C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.56
Offset:6
Orientation:forward strand
Alignment:AATGTAGCTC--
------GCTCCG
 C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AATGTAGCTC-
-AAYTAGGTCA
 C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C A C G T
A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AATGTAGCTC-
-ATCAAGGTCA
 C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C A C G T
A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AATGTAGCTC--
NNNTTAGGTAGCNTNT
 A C G T A C G T A C G T A C G T C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C A C G T A C G T
A C T G C A G T G C T A C A G T A G C T C G T A C T A G A C T G C G A T C T G A C T A G A G T C C T G A C G A T C T A G G A C T

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:10
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----AATGTAGCTC
GHTACAWTGTADCHR
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A G A C T A C T G A C G T C G T A A C T G A G T C A C G T G T A C
C T A G G T C A G C A T C G T A A T G C G C T A C G T A C G A T T C A G G C A T C G T A C G A T G T A C G C T A C T G A