Information for 9-GCTAWTTGCA (Motif 14)

A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A
Reverse Opposite:
A C G T A T C G A G T C C G T A G T C A C G T A A C G T C G T A C T A G A G T C
p-value:1e-9
log p-value:-2.141e+01
Information Content per bp:1.805
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif166.1
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets39.1 +/- 29.8bp
Average Position of motif in Background47.8 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GCTAWTTGCA---
---ATTTGCATAT
 A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GCTAWTTGCA---
---ATTTGCATAA
 A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCTAWTTGCA---
TTCATTTGCATAT
 A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A A C G T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCTAWTTGCA
-TTAAGTGC-
 A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A
A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCTAWTTGCA
-CTAATKGV-
 A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

Msx3/MA0709.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCTAWTTGCA
-NTAATTGN-
 A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A
A C G T A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCTAWTTGCA-----
TNTAATTTGCATACNA
 A C G T A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCTAWTTGCA-----
TNTAATTTGCATACNA
 A C G T A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCTAWTTGCA-----
TNTAATTTGCATANNN
 A C G T A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

POU3F4/MA0789.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCTAWTTGCA--
---ATTTGCATA
 A C T G A G T C G C A T G T C A C G A T A C G T A C G T A C T G A T G C C G T A A C G T A C G T
A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A