Information for 11-RTGACTAAGGGAM (Motif 14)

C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C
Reverse Opposite:
C A T G A C G T A G T C A G T C A G T C G A C T A G C T C G T A T C A G G C A T A T G C C G T A A G C T
p-value:1e-10
log p-value:-2.386e+01
Information Content per bp:1.728
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif18.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets58.1 +/- 23.6bp
Average Position of motif in Background57.7 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:RTGACTAAGGGAM
----CTAATKGV-
 C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C
A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---RTGACTAAGGGAM
NNNGTAACTANGNNA-
 A C G T A C G T A C G T C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---RTGACTAAGGGAM
ACCGTGACTAATTNN-
 A C G T A C G T A C G T C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A A C G T

JUNB/MA0490.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--RTGACTAAGGGAM
GGATGACTCAT----
 A C G T A C G T C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C
C A T G C T A G T C G A A C G T A C T G C G T A A T G C A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RTGACTAAGGGAM---
TGCGCATAGGGGAGGAG
 A C G T C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C A C G T A C G T A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

FOSL2/MA0478.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--RTGACTAAGGGAM
GGATGACTCAT----
 A C G T A C G T C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C
A C T G T C A G C T G A A C G T A C T G T C G A A T G C A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------RTGACTAAGGGAM---
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

FOSL1/MA0477.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-RTGACTAAGGGAM
GGTGACTCATG---
 A C G T C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C
C T A G T C A G A C G T A C T G C G T A T A G C A C G T G T A C C G T A A C G T T A C G A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---RTGACTAAGGGAM
NNCGTTGCTATGGNN-
 A C G T A C G T A C G T C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T

MAF::NFE2/MA0501.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:RTGACTAAGGGAM--
ATGACTCAGCAATTT
 C T G A C G A T A T C G C G T A A G T C C G A T C T G A C G T A C T A G C T A G C T A G C G T A G T A C A C G T A C G T
T C G A A C G T A C T G C G T A A T G C C G A T G T A C C G T A C A T G A T G C C T G A C T G A C G A T G C A T G A C T