Information for 3-CACTCATTTGAAAGGA (Motif 6)

A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A
Reverse Opposite:
G C A T G T A C A G T C A C G T A C G T A C G T A T G C C G T A C G T A C G T A C G A T A C T G C G T A A C T G C G A T A T C G
p-value:1e-13
log p-value:-3.108e+01
Information Content per bp:1.904
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.8 +/- 22.8bp
Average Position of motif in Background41.3 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CACTCATTTGAAAGGA
-----ATTTGAATT--
 A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CACTCATTTGAAAGGA
-----ACATCAAAGG-
 A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A
A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CACTCATTTGAAAGGA
--CTCATTTGCATW--
 A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A
A C G T A C G T A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CACTCATTTGAAAGGA
------TTTGAAACCG
 A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CACTCATTTGAAAGGA
-----ACWTCAAAGG-
 A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A
A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CACTCATTTGAAAGGA-
---AAAGATCAAAGGAA
 A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A A C G T
A C G T A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CACTCATTTGAAAGGA
AASCACTCAA---------
 A C G T A C G T A C G T A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CACTCATTTGAAAGGA-
-----ACATCAAAGGNA
 A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

PB0083.1_Tcf7_1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CACTCATTTGAAAGGA---
--TATAGATCAAAGGAAAA
 A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CACTCATTTGAAAGGA
ATAACCACTTGAAAATT
 A C G T A T G C C G T A A G T C A C G T A G T C C G T A A C G T A C G T A C G T A T C G C G T A C G T A G T C A C T A G C A T G C G T A
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T