Information for 3-AAACAATTTGTCA (Motif 5)

C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A
Reverse Opposite:
A C G T A T C G C G T A A T G C C G T A C G T A C G T A A C G T A C G T T A C G A C G T A C G T A C G T
p-value:1e-13
log p-value:-3.108e+01
Information Content per bp:1.935
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 26.5bp
Average Position of motif in Background47.2 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----AAACAATTTGTCA
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

PB0066.1_Sox17_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AAACAATTTGTCA
ATAAACAATTAAACA
 A C G T A C G T C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0165.1_Sox11_2/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AAACAATTTGTCA
NNCNNAACAATTNT---
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAACAATTTGTCA
NAACAAT------
 C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAACAATTTGTCA
GTAAACAAT------
 A C G T A C G T C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AAACAATTTGTCA----
--NNAATTAGTCACGGT
 C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AAACAATTTGTCA
TTAAGAACAATAAATT-
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAACAATTTGTCA
AAACMATTAN---
 C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AAACAATTTGTCA
TCACGGAACAATAGGTG-
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AAACAATTTGTCA
-AACAAT------
 C G T A C G T A C G T A A G T C G T C A C G T A A C G T A C G T A C G T A T C G A C G T A T G C C G T A
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T