Information for 8-GTCACCTYCTTCATGG (Motif 9)

A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G
Reverse Opposite:
G A T C A G T C C G T A G C A T A T C G T G C A G T C A C T A G C T G A C G T A C T A G A C T G C A G T A T C G C G T A A G T C
p-value:1e-11
log p-value:-2.608e+01
Information Content per bp:1.747
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.9 +/- 29.1bp
Average Position of motif in Background48.2 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTCACCTYCTTCATGG
GTGACCTT--------
 A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GTCACCTYCTTCATGG----
------ACATTCATGACACG
 A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GTCACCTYCTTCATGG
-TGACCTYA-------
 A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GTCACCTYCTTCATGG
NNNGTGACCTTTGNNN---
 A C G T A C G T A C G T A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GTCACCTYCTTCATGG---
--GACCACATTCATACAAT
 A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G A C G T A C G T A C G T
A C G T A C G T T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GTCACCTYCTTCATGG
NTGACCTTGA------
 A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GTCACCTYCTTCATGG
-TGACCTTGAT-----
 A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:GTCACCTYCTTCATGG
-TGACCTARTT-----
 A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:9
Score:0.47
Offset:0
Orientation:forward strand
Alignment:GTCACCTYCTTCATGG
GAGCCCTTGTCCCTAA
 A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:GTCACCTYCTTCATGG
-TGACCTTTGCCCTA-
 A C T G A C G T T A G C G C T A G T A C A G T C A C G T G A C T G A T C A C G T A C G T A T G C C G T A A C G T A C T G C T A G
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T