Information for 2-ATGGGACAHA (Motif 3)

C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A
Reverse Opposite:
A C G T C G A T A C G T C A T G C G A T T A G C G T A C A G T C G T C A A G C T
p-value:1e-12
log p-value:-2.782e+01
Information Content per bp:1.674
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif1090.0
Percentage of Background Sequences with motif2.41%
Average Position of motif in Targets49.4 +/- 25.1bp
Average Position of motif in Background49.8 +/- 35.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATGGGACAHA---
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ATGGGACAHA
CCAGGAACAG-
 A C G T C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATGGGACAHA
AGGTGTGAAM
 C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGGGACAHA
GGAGGGGGAA--
 A C G T A C G T C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A
A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATGGGACAHA
CSTGGGAAAD-
 A C G T C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATGGGACAHA---
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----ATGGGACAHA---
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

JDP2/MA0655.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATGGGACAHA
ATGAGTCAT-
 C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A
C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T

JUND/MA0491.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGGGACAHA
NATGAGTCACN
 A C G T C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A
A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C

FOS/MA0476.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGGGACAHA
NATGAGTCANN
 A C G T C T G A A C G T A C T G A C T G A T C G G C T A G T A C C G T A G C T A T G C A
T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A