Information for 13-CCTATGCACT (Motif 27)

A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A C T G A G T C C G T A A C G T C G T A A C T G A C T G
p-value:1e-4
log p-value:-9.512e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.0 +/- 13.5bp
Average Position of motif in Background80.6 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTATGCACT-
TGACCTTTGCCCTA
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCTATGCACT
CCTTTGAWGT
 A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T
A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCTATGCACT
GHATATKCAT-
 A C G T A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCTATGCACT---
---MRSCACTYAA
 A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTATGCACT--
TGACCTTTGCCCTAN
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCTATGCACT---
---AAGCACTTAA
 A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTATGCACT--
TGGACTTTGNNCTCN
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

PB0128.1_Gcm1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------CCTATGCACT
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

PB0096.1_Zfp187_1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCTATGCACT-----
-TTATGTACTAATAA
 A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCTATGCACT---
---AASCACTCAA
 A G T C A G T C A C G T C G T A A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A