Information for 6-CASAGYTCAGYRT (Motif 18)

A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
Reverse Opposite:
C T G A A G C T C T A G A G T C A C G T A C T G C G T A C T G A A G T C A C G T A T C G A C G T A C T G
p-value:1e-9
log p-value:-2.082e+01
Information Content per bp:1.878
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.8 +/- 29.9bp
Average Position of motif in Background12.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CASAGYTCAGYRT
CAAAGGTCAG---
 A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------CASAGYTCAGYRT
CANAGNNCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------CASAGYTCAGYRT
AGAGTCCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CASAGYTCAGYRT
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CASAGYTCAGYRT
GAGGTCAAAGGTCA----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CASAGYTCAGYRT
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CASAGYTCAGYRT
-AGRGGTCA----
 A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CASAGYTCAGYRT
TAGGGCAAAGGTCA----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CASAGYTCAGYRT
GAGGTCAAAGGTCA----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CASAGYTCAGYRT
-TRAGGTCA----
 A G T C C G T A A T G C C G T A A C T G A G C T A C G T A G T C C G T A A C T G A G T C C T G A A G C T
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T