Information for 2-CACACTGSAARMV (Motif 12)

A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G
Reverse Opposite:
A G T C C A T G A G T C A G C T C A G T A T C G A G T C C G T A T A C G A C G T A C T G A C G T A C T G
p-value:1e-9
log p-value:-2.301e+01
Information Content per bp:1.712
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.99%
Number of Background Sequences with motif311.2
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets48.4 +/- 28.8bp
Average Position of motif in Background49.6 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CACACTGSAARMV
-ACAAAG------
 A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CACACTGSAARMV
GACAATGNN----
 A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CACACTGSAARMV
CTCACACAATGGCGC--
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CACACTGSAARMV-
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CACACTGSAARMV-
CAATCACTGGCAGAAT
 A C G T A C G T A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CACACTGSAARMV
VRRACAAWGG-----
 A C G T A C G T A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CACACTGSAARMV
VRAACAATGG-----
 A C G T A C G T A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CACACTGSAARMV
GCGACCACACTG------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CACACTGSAARMV
NWAACCACADNN------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CACACTGSAARMV
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A A T G C C G A T A C T G T A G C G T C A T C G A C T A G G T A C T C A G
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A