Information for 5-CAGGACACATTGATCA (Motif 11)

A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A C G T A G T C C G T A G T C A A C G T C T A G C G A T A T C G A G C T A G T C A G T C A C G T A C T G
p-value:1e-4
log p-value:-1.124e+01
Information Content per bp:1.923
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.7 +/- 11.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0016.1_Cux1_1/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CAGGACACATTGATCA-----
----ACCGGTTGATCACCTGA
 A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGGACACATTGATCA
NAGGTCACNNTGACC-
 A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGGACACATTGATCA
VAGRACAKWCTGTYC-
 A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:CAGGACACATTGATCA--
--------ATTGATTYND
 A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CAGGACACATTGATCA
------NTATYGATCH
 A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAGGACACATTGATCA
AAGAACATWHTGTTC-
 A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C A C G T

CUX1/MA0754.1/Jaspar

Match Rank:7
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CAGGACACATTGATCA
------NTATCGATTA
 A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C G T C G T A G C A T A G T C T C A G T C G A G A C T G A C T C T G A

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGGACACATTGATCA
VAGRACAKNCTGTBC-
 A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CAGGACACATTGATCA
------TCATCAATCA
 A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

ESR1/MA0112.3/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGGACACATTGATCA-
CAGGTCACCGTGACCTT
 A G T C C G T A A C T G A C T G C T G A A T G C C G T A A G T C C G T A A C G T A C G T C T A G C G T A A C G T A G T C C G T A A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T