Information for 1-TGGCTATGTTACCCCC (Motif 1)

A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C
Reverse Opposite:
C T A G A C T G C T A G C T A G A C T G A C G T C G T A G T C A A G T C C G T A G C A T C T G A A C T G A G T C A T G C C G T A
p-value:1e-10
log p-value:-2.428e+01
Information Content per bp:1.770
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.5 +/- 18.3bp
Average Position of motif in Background62.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0156.1_Plagl1_2/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGGCTATGTTACCCCC----
---NNNNGGTACCCCCCANN
 A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C

PH0137.1_Pitx1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TGGCTATGTTACCCCC-----
----NTTGTTAATCCCTCTNN
 A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

PH0123.1_Obox3/Jaspar

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGGCTATGTTACCCCC-----
----ATAGTTAATCCCCCNNA
 A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGGCTATGTTACCCCC
TACCCTAGTTACCGA-
 A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A A C G T

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGGCTATGTTACCCCC-----
----NTAGTTAATCCCCTTAN
 A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TGGCTATGTTACCCCC
---ACTAGTTAAC---
 A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C
A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGGCTATGTTACCCCC--
-ANANNTGATACCCNATN
 A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C A C G T A C G T
A C G T C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

PH0122.1_Obox2/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TGGCTATGTTACCCCC-----
----ATAGTTAATCCCCCTCA
 A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGGCTATGTTACCCCC
-NCNTTTGTTATTTNN
 A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C
A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TGGCTATGTTACCCCC----
---AATCGTTAATCCCTTTA
 A C G T T A C G C T A G G T A C A G C T C G T A C G A T A C T G A C G T A C G T C G T A G T A C A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C