Information for 3-CTCTTGACTTGAG (Motif 6)

A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G
Reverse Opposite:
A G T C C G A T G T A C C G T A C G T A A C T G A C G T A G T C C G T A C G T A A C T G C G T A A T C G
p-value:1e-7
log p-value:-1.707e+01
Information Content per bp:1.946
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.90%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.8 +/- 29.2bp
Average Position of motif in Background50.3 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTCTTGACTTGAG
---TTGACTTTT-
 A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G
A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTCTTGACTTGAG
CNNTTGACCTTTG
 A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CTCTTGACTTGAG
TAAGCCACTTGAAATT--
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTGACTTGAG
NNACTTGCCTT---
 A C G T A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

Mitf/MA0620.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTGACTTGAG
NCACGTGACN----
 A C G T A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G
A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C A C G T A C G T A C G T A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTGACTTGAG-
NNNTATTGAATTGNNN
 A C G T A C G T A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CTCTTGACTTGAG
TAAGCCACTTGAAATT--
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTGACTTGAG
NSCACTYVAV-----
 A C G T A C G T A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTCTTGACTTGAG
TGACCTTTTGACCTC--
 A C G T A C G T A C G T A C G T A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G
A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CTCTTGACTTGAG
TAAGCCACTTGAATTT--
 A C G T A C G T A C G T A C G T A C G T A T G C A C G T A G T C A C G T A C G T A C T G C G T A G T A C A C G T A C G T A C T G C G T A A C T G
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T A C G T A C G T