Information for 2-TGTGATABAATAT (Motif 5)

A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T
Reverse Opposite:
G T C A C G A T C G T A A C G T A C G T T A G C A C G T C G T A A C G T A G T C C T G A A T G C C G T A
p-value:1e-8
log p-value:-2.061e+01
Information Content per bp:1.780
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif6.49%
Number of Background Sequences with motif28.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets45.2 +/- 23.2bp
Average Position of motif in Background51.5 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGTGATABAATAT--
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGTGATABAATAT
-GTCATAAAAN--
 A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T

Six3/MA0631.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGTGATABAATAT-
ANANGTGATACCCTATN
 A C G T A C G T A C G T A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T A C G T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

PH0163.1_Six3/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGTGATABAATAT-
ANANGTGATACCCTATN
 A C G T A C G T A C G T A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T A C G T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGTGATABAATAT
-CCAATAAAAA--
 A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGTGATABAATAT
-GCAATAAAA---
 A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGTGATABAATAT--
CATACAATACGAAATAA
 A C G T A C G T A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGTGATABAATAT-
TAGGTAATAAAATTCA
 A C G T A C G T A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

CDX2/MA0465.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGTGATABAATAT
AAGCCATAAAA---
 A C G T A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGTGATABAATAT
GGTAATAAAAA--
 A C G T A T C G A G C T C T A G C G T A A C G T C G T A A C T G G T C A C G T A C G A T C G T A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T