Information for 2-WCTMACWTWRATSAMA (Motif 3)

C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A
Reverse Opposite:
A C G T C A G T A C G T A T C G C G T A A C G T A G C T C G A T C G T A C G A T A C T G A C G T A C T G C G T A A C T G C G A T
p-value:1e-9
log p-value:-2.122e+01
Information Content per bp:1.820
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.90%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.0 +/- 12.8bp
Average Position of motif in Background29.7 +/- 4.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.57
Offset:4
Orientation:forward strand
Alignment:WCTMACWTWRATSAMA
----TCATCAATCA--
 C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A
A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:WCTMACWTWRATSAMA
---GCCATAAATCA--
 C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.56
Offset:4
Orientation:forward strand
Alignment:WCTMACWTWRATSAMA--
----ACATTCATGACACG
 C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PBX1/MA0070.1/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:WCTMACWTWRATSAMA
----CCATCAATCAAA
 C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A
A C G T A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PB0001.1_Arid3a_1/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:WCTMACWTWRATSAMA----
---GGGTTTAATTAAAATTC
 C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:WCTMACWTWRATSAMA------
-----TATAGATCAAAGGAAAA
 C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:WCTMACWTWRATSAMA------
-----NNNAGATCAAAGGANNN
 C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

PB0040.1_Lef1_1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:WCTMACWTWRATSAMA------
-----NANAGATCAAAGGGNNN
 C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:WCTMACWTWRATSAMA
------TTTAAT----
 C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--WCTMACWTWRATSAMA
NNACTTACCTN-------
 A C G T A C G T C G T A A G T C A C G T G T A C C G T A A G T C C G T A A C G T G C A T C T G A C G T A A C G T T A C G C G T A G T A C C G T A
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T