Information for 15-GASARATTAC (Motif 42)

A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C
Reverse Opposite:
A C T G A C G T C T G A C G T A A C G T A G T C A C G T A T G C A C G T A G T C
p-value:1e-4
log p-value:-1.020e+01
Information Content per bp:1.902
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif27.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets44.5 +/- 25.0bp
Average Position of motif in Background49.5 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GASARATTAC
--RGGATTAR
 A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

BSX/MA0876.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GASARATTAC
--CCAATTAA
 A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C
A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

Nobox/MA0125.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GASARATTAC
-ACCAATTA-
 A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C
A C G T T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A A C G T

EVX1/MA0887.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GASARATTAC-
-GGTAATTAGC
 A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C A C G T
A C G T T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C

GSC/MA0648.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GASARATTAC-
-NNGGATTAGN
 A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C A C G T
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

HOXA2/MA0900.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GASARATTAC-
-CCTAATTACC
 A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C A C G T
A C G T T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C

HOXB2/MA0902.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GASARATTAC-
-AGTAATTAAC
 A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C A C G T
A C G T T C G A T A C G G A C T T G C A T C G A A C G T G A C T G C T A T C G A T G A C

HOXB3/MA0903.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GASARATTAC-
-ACTAATTAGC
 A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C A C G T
A C G T C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

VENTX/MA0724.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GASARATTAC
-ACCGATTAG
 A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C
A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GASARATTAC-
TGATTRATGGCY
 A C G T A C T G C G T A A T C G C G T A C T A G C G T A A C G T G A C T C G T A A G T C A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C