Information for 5-TRTGTATGCAGTA (Motif 10)

A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A
Reverse Opposite:
A G C T T G C A A G T C A C G T T A C G A G T C C G T A A C G T C T G A A G T C C G T A A G T C C G T A
p-value:1e-11
log p-value:-2.629e+01
Information Content per bp:1.854
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 24.6bp
Average Position of motif in Background39.2 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TRTGTATGCAGTA
CCATTGTATGCAAAT
 A C G T A C G T A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TRTGTATGCAGTA
TGTGGATTNNN--
 A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A
C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TRTGTATGCAGTA
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TRTGTATGCAGTA-----
-NNNANTGCAGTGCNNTT
 A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TRTGTATGCAGTA
-GHATATKCAT--
 A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TRTGTATGCAGTA-
ACTATGAATGAATGAT
 A C G T A C G T A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TRTGTATGCAGTA--
NSTGTTTRCWCAGBNNN
 A C G T A C G T A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A A C G T A C G T
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TRTGTATGCAGTA
AATGTATCAAT--
 A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TRTGTATGCAGTA
AYATGYATATGCATR-
 A C G T A C G T A C G T A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TRTGTATGCAGTA
NTGTTTAYATWW--
 A C G T A C G T C T A G A C G T A C T G A G C T C G T A A C G T A C T G A G T C C G T A A C T G A C G T C T G A
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A A C G T A C G T