Information for 1-WCAACAGGAGAGATCA (Motif 2)

C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A
Reverse Opposite:
A C G T A C T G C T G A C G A T A G T C A G C T A G T C C G A T A T G C A G T C A G C T T A C G A G C T C A G T A C T G G C A T
p-value:1e-13
log p-value:-3.070e+01
Information Content per bp:1.766
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 24.2bp
Average Position of motif in Background63.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.58
Offset:4
Orientation:forward strand
Alignment:WCAACAGGAGAGATCA-----
----AAGGCGAAATCATCGCA
 C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

SCRT2/MA0744.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--WCAACAGGAGAGATCA
ATGCAACAGGTGG-----
 A C G T A C G T C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--WCAACAGGAGAGATCA
GAGCAACAGGTGGTT---
 A C G T A C G T C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.56
Offset:9
Orientation:forward strand
Alignment:WCAACAGGAGAGATCA-
---------AAGGTCAC
 C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.56
Offset:8
Orientation:forward strand
Alignment:WCAACAGGAGAGATCA
--------TRAGGTCA
 C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.55
Offset:8
Orientation:forward strand
Alignment:WCAACAGGAGAGATCA
--------AGRGGTCA
 C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:WCAACAGGAGAGATCA
----CAGGTGAGG---
 C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A
A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-WCAACAGGAGAGATCA
ATCCACAGGTGCGAAAA
 A C G T C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

LEF1/MA0768.1/Jaspar

Match Rank:9
Score:0.53
Offset:8
Orientation:forward strand
Alignment:WCAACAGGAGAGATCA-------
--------AAAGATCAAAGGGTT
 C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

Tcf7/MA0769.1/Jaspar

Match Rank:10
Score:0.52
Offset:8
Orientation:forward strand
Alignment:WCAACAGGAGAGATCA----
--------AAAGATCAAAGG
 C G T A A G T C G T C A C T G A A G T C C T G A A C T G A T C G C G T A T A C G C T G A A C T G C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G